WEB RESULTS

http://evolution.unibas.ch/walser/bacteria_community_analysis/2015-02-10_MBM_tutorial_combined.pdf

Alpha Diversity: within sample diversity ... ACE (abundance-‐based coverage es( mators): involves an arbitrary abundance ... Alpha Diversity: species evenness.

https://www.researchgate.net/figure/Alpha-diversity-assessed-by-richness-Chao1-ACE-and-diversity-Shannon-Simpson_fig1_329615923

Download scientific diagram | Alpha-diversity assessed by richness (Chao1, ACE ) and diversity (Shannon, Simpson). Median estimates compared across ...

http://www.jmb.or.kr/submission/Journal/027/JMB027-12-02_FDOC_2.pdf

Oct 14, 2017 ... observed in samples), whereas ACE (Abundance-based. Coverage Estimator) and Chao1 indices are used to estimate richness (estimated ...

https://forum.qiime2.org/t/alpha-and-beta-diversity-explanations-and-commands/2282

Jan 28, 2018 ... The following list provides information on the available alpha diversity metrics in QIIME 2. Abundance-based Coverage Estimator (ACE) metric: Calculates the ...

https://en.wikipedia.org/wiki/Alpha_diversity

In ecology, alpha diversity (α-diversity) is the mean species diversity in sites or habitats at a local scale. The term was introduced by R. H. Whittaker together with  ...

https://en.wikipedia.org/wiki/Diversity_index

A diversity index is a quantitative measure that reflects how many different types ( such as ... Defining beta diversity as a function of alpha and gamma diversity". Ecography. 33: 2–22. doi:10.1111/j.1600-0587.2009.05880.x. ^ Jump up to: Hill,  ...

http://scikit-bio.org/docs/0.1.3/math.diversity.alpha.html

All alpha diversity measures accept a vector of counts within a single sample, ... ace(counts[, rare_threshold]), Calculate the ACE metric (Abundance-based ...

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC93182/

Reliable estimates of microbial diversity would offer a means to address once ... The Chao1 and abundance-based coverage estimators (ACE) use this ...

https://madsalbertsen.github.io/ampvis2/reference/amp_alphadiv.html

Calculate alpha-diversity indices for each sample and combines with the metadata. ... (logical) Also calculate sample richness estimates (Chao1 and ACE) as ...

https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-018-0603-4/figures/2

Alpha-diversity assessed by richness (Chao1, ACE) and diversity (Shannon, Simpson). Median estimates compared across cohorts using the Kruskal-Wallis test ...