A cystoscopy procedure usually costs $386 for the physician fee and it is typically done in the doctor's office, according to Healthcare Blue Book. With health insurance, the cost is the co-pay plus 10 to 50 percent of the procedure cost or $350 to $3,000 without insurance, according to CostHelper.
If the cystoscopy is performed in an ambulatory surgery center, the patient pays additional fees for the facility and possibly for anesthesia. The patient should ask the doctor whether the procedure must be done in a surgery center due to the patient's health, condition or specific procedure. If not, the cost can be kept low by performing the procedure in the doctor's office, according to Healthcare Blue Book.