Bagel Bites should be cooked in the microwave for two minutes and 20 seconds. They should be allowed to rest for a minute prior to eating them.
Bagel Bites can also be cooked in an oven. They should be placed in an oven that has been preheated to 450 degrees Fahrenheit. Mozzarella and three-cheese varieties only need to be cooked for 12 minutes. All other types should be cooked for 14 minutes.
A toaster oven can also be used to cook Bagel Bites. The toaster oven should be pre-heated to 400 degrees Fahrenheit. The Bagel Bites should be cooked for 14 minutes.