Some reusable containers for tomatoes include Food Huggers, reusable produce bags, glass or plastic containers with lids, and beeswax-treated cloth. The products are available in stores, online or as a make-at-home project.
Food Huggers are silicone caps designed to cover the exposed side of a partially used tomato or other piece of produce. They are only available online as of 2016.
Many sellers offer reusable produce bags, designed to store whole, unused tomatoes. Thekitchn.com has a list of bags from different suppliers that vary in materials from mesh to muslin or canvas.
Instead of using plastic wrap to store produce, try wraps made of cloth dipped in beeswax. These are available online or can be created at home.