In the second case, which was consolidated from two cases by the U.S. District Court for the District of Columbia, the City of New York and several organizations related to health care alleged injury from President Clinton's cancellation of certain provisions of the Balanced Budget Act of 1997 that eliminated certain liabilities, and Snake River Potato Growers, Inc. alleged injury from the President's cancellation of certain provisions of the Taxpayer Relief Act of 1997 that gave tax benefits to aid farmer's cooperatives in purchasing potato processing facilities.
The District Court ruled for the plaintiffs, holding that the Line Item Veto Act was unconstitutional. Because the Act established an expedited appeal process for challenges, the case was directly appealed from the District Court to the Supreme Court.
Michael B. Rappaport argued that the original meaning of the Constitution does not apply to certain parts of the nondelegation doctrine, relying on his interpretation of the Executive Power Vesting Clause. Under this view, "laws that authorize the withdrawal of money from the treasury and which have traditionally taken the form of authorizing a certain amount to be spent for particular programs ... are not subject to the nondelegation doctrine. He further criticized the majority opinion for failing to satisfactorily justify its application of a stricter standard to the delegation of cancellation authority than it had used in the past for other executive delegations. In Rappaport’s opinion, "...the Court’s approach to cancellation authority has no basis in text, structure and purpose, or precedent.
J. Stephen Kennedy wrote that the majority of the Supreme Court was sufficiently concerned with the constitution challenges the line item veto presented to declare the act wholly unconstitutional, instead of relying on other traditional and less sweeping ways of correcting acts of Congress. In his view, “the Court’s decision sent a clear message of finality for any future use of the line item veto.” Kennedy also noted that while the majority relied on a strict interpretation or literal textual reading of the Presentment Clause contained in Article I of the United States Constitution, Justice Scalia, in his dissent, “stray[ed] somewhat from his usual strict constructionist approach ... by stressing that the President’s act of cancellation would only occur after satisfaction of the Presentment Clause.”
Steven F. Huefner wrote that "Although the Presentment Clause analysis of the Line Item Veto Act has superficial appeal, it ultimately does not withstand scrutiny, arguing that the Court should have relied on the nondelegation doctrine in order to invalidate the Act, as it provided a superior basis for such a decision. Huefner named two main implications of the Court’s refusal to use the nondelegation doctrine. First, it suggests that the Court seems unready or unwilling to alter the existing interpretation of the nondelegation doctrine. Second, the Court has shown that it is willing to rely upon alternative rationales to achieve the same result "as would a more robust nondelegation doctrine rationale". This approach is significant because in theory, such a rationale could endanger previously accepted delegations to the executive.
Roy E. Brownell criticized the Clinton administration for its exercise of the Line Item Veto Act, charging that it should have restricted its cancellation powers only to statutory provisions that remain in the realm of national security. He argued that had the Clinton administration limited its use of the Line Item Veto Act in this fashion, it would have ensured that when the constitutionality of the Act was inevitably challenged, the challenge would have been based on terms most favorable to the Executive. Brownell suggested that a test case brought forth on the grounds of national security would have likely acknowledged the existence of "National Security Rescission", "a narrow statutory construction limiting the area of presidential cancellation power to within the field of national security. Such a result...would have assured that the President maintained cancellation authority over a sixth of the federal budget.
On that same day, Joshua Bolten, the Director of the Office of Management and Budget, gave a press conference on the president’s line-item veto proposal. Bolten explained that the proposed Act would give the President the ability to single out “wasteful” spending and to put such spending on hold. While the spending line-item is on hold, the President can send legislation to Congress to rescind the particular line-item. The proposal would then be considered in both houses within ten days on an up or down basis, and could be passed by a simple majority. Additionally, such proposals could not be filibustered.
When asked how this proposed legislation was different from the 1996 Line Item Veto Act that was found unconstitutional by the United States Supreme Court, Bolten said that whereas the former act granted unilateral authority to the Executive to disallow specific spending line items, the new proposal would seek Congressional approval of such line-item vetoes. Thus, in order for the President to successfully rescind previously enacted spending, a simple majority of Congress is required to agree to specific legislation to that effect.
Though the current line-item veto proposal is much weaker than the 1996 version, it has nevertheless failed to find strong support in Congress. Senator Robert C. Byrd of West Virginia called it "an offensive slap at Congress," asserting that the legislation would enable the president to intimidate individual members of Congress by targeting the projects of his political opponents. He also complained that the line-item veto as proposed would take away Congress’ constitutional "power of the purse" and give it to the Executive branch.
On June 8, 2006, Viet D. Dinh, Professor of Law at Georgetown University Law Center, and Nathan A. Sales, John M. Olin Fellow at Georgetown University Law Center testified by written statement before the House Committee on the Budget on the constitutional issues in connection with the proposed legislation. Dinh and Sales argued that the Legislative Line Item Veto Act of 2006 satisfies the Constitution’s Bicameralism and Presentment Clause, and therefore avoids the constitutional issues raised in the 1996 Act struck down by the Supreme Court. They also stated that the proposed Act is consistent with the basic principle that grants Congress broad discretion to establish procedures to govern its internal operations.
The proposed Act was approved by the House Budget Committee on June 14, 2006 by a vote of 24-9.