After a year as a Major League scout for the Los Angeles Dodgers, and spending as bench coach for the Colorado Rockies, Howe was selected to replace the high-profile Tony La Russa as manager of the Athletics for . The A’s suffered through three losing seasons under Howe before, in , they returned to contention. In , and , the A’s won 91, 102 and 103 games respectively and made the American League playoffs in each season. But they did not win a playoff series, and Howe and general manager Billy Beane grew estranged. At the end of 2002, despite a seven-year mark of 600-533 (.530), Howe was released from his Oakland contract to become the highly paid manager of the New York Mets.
His two years in New York proved highly unsuccessful. The Mets won only 42 percent of their games, the front office went through three general managers, and attendance at Shea Stadium fell. In September 2004, word of Howe’s impending firing was leaked to the media two weeks before the season ended, but he was allowed to finish the year. Ultimately, the general manager of the club, Omar Minaya, replaced Howe with Willie Randolph, bench coach for the New York Yankees.
On October 16, 2006, he was hired as the third base coach and an infield instructor by the Philadelphia Phillies. After the Texas Rangers hired Ron Washington (a former coach under Howe in Oakland) as their new manager, the Phillies gave Howe permission to speak with the Rangers about any openings in the organization. On November 7, 2006, Howe was hired by the Rangers as Washington's bench coach. He served two years in that role (2007-08) but his contract was not renewed at the end of the Rangers' disappointing season.
Howe is married to his high school sweetheart, Betty. They have three children and three grandchildren.
| Team | Year | Regular Season | Post Season | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Games | Won | Lost | Win % | Finish | Won | Lost | Win % | Result | ||
| Houston Astros | 1989 | 162 | 86 | 76 | .531 | 3rd in NL West | - | - | - | - |
| 1990 | 162 | 75 | 87 | .463 | 5th in NL West | - | - | - | - | |
| 1991 | 162 | 65 | 97 | .401 | 6th in NL West | - | - | - | - | |
| 1992 | 162 | 81 | 81 | .500 | 4th in NL West | - | - | - | - | |
| 1993 | 162 | 85 | 77 | .525 | 3rd in NL West | - | - | - | - | |
| Houston Astros Total | 810 | 392 | 418 | .484 | - | - | - | - | ||
| Oakland Athletics | 1996 | 162 | 78 | 84 | .481 | 3rd in AL West | - | - | - | - |
| 1997 | 162 | 65 | 97 | .401 | 4th in AL West | - | - | - | - | |
| 1998 | 162 | 74 | 88 | .457 | 4th in AL West | - | - | - | - | |
| 1999 | 162 | 87 | 75 | .537 | 2nd in AL West | - | - | - | - | |
| 2000 | 161 | 91 | 70 | .565 | 1st in AL West | 2 | 3 | .400 | Lost to New York Yankees | |
| 2001 | 162 | 102 | 60 | .630 | 2nd in AL West | 2 | 3 | .400 | Lost to New York Yankees | |
| 2002 | 162 | 103 | 59 | .636 | 1st in AL West | 2 | 3 | .400 | Lost to Minnesota Twins | |
| Oakland Athletics Total | 1,133 | 600 | 534 | .530 | 2 Division Championships 1 Wild Card | 6 | 9 | .400 | 3 Playoff Appearances | |
| New York Mets | 2003 | 161 | 66 | 95 | .410 | 5th in NL East | - | - | - | - |
| 2004 | 162 | 71 | 91 | .438 | 4th in NL East | - | - | - | - | |
| New York Mets Total | 323 | 137 | 186 | .424 | - | - | - | - | ||
| Total | 2,266 | 1,129 | 1,137 | .498 | 6 | 9 | .400 | 3 Playoff Appearances | ||