After McLaren's exclusion from the Constructors' Championship, Ferrari had been confirmed as Constructors' Champions, following their Belgian Grand Prix one-two. They were 71 points ahead of BMW Sauber.
Three Japanese constructors and two Japanese drivers competed in the race. Toyota were 6th in the Constructors' Championship, whilst Honda were 8th, behind their own "B-team" Super Aguri. Takuma Sato was 15th in the Drivers' Championship for Super Aguri, whilst compatriot Sakon Yamamoto had yet to score for Spyker F1, having debuted at the Hungarian Grand Prix.
Due to torrential rainfall, the race was started under the safety car, which led the field for the first 19 laps. The Ferraris of Kimi Räikkönen and Felipe Massa were forced to pit during the first few laps after starting on standard wet tyres, as opposed to "extreme wet" tyres, which were a requirement in the treacherously wet conditions. Ferrari boss Jean Todt later stated that the team were not informed about the requirements prior to the race, although all other teams were.
The Ferraris dropped back to 20th and 21st positions respectively following the pitstops, and Massa pitted again on lap 15. When the safety car finally left the circuit, the two McLarens began the race proper at the head of the field, in front of a quick-starting Sebastian Vettel. The Toro Rosso driver had clinched 3rd place from Nick Heidfeld, after the latter collided with Jenson Button's Honda. Mark Webber reached 4th place during the first racing lap as a result of the collision. A first-corner spin caused Alexander Wurz to collide heavily with Felipe Massa's Ferrari. Wurz's car sustained heavy damage and he retired on the spot.
Later in the race, Fernando Alonso crashed out. The reigning World Champion blamed aquaplaning for the accident, which once again brought out the safety car. During this safety car period on lap 45, third-placed Sebastian Vettel collided with second-placed Webber in the wet conditions. This collision put Heikki Kovalainen's Renault in 2nd place, which he managed to hold until the end of the race, despite repeated overtaking attempts by Kimi Räikkönen. The Ferrari driver would eventually finish third, ahead of David Coulthard in fourth for Red Bull Racing.
On the final lap, Felipe Massa prevailed in a spectacular battle with BMW driver Robert Kubica. The Pole had previously served a drive through penalty for colliding with Hamilton. Massa finished 6th, and Kubica 7th, behind Giancarlo Fisichella's Renault. Vitantonio Liuzzi finished in 8th, scoring the first 2007 championship points for Toro Rosso. However, these points were later removed when Liuzzi was penalised for overtaking Adrian Sutil under waved yellow flags. This promoted Sutil to 8th, giving him and the Spyker team their first F1 points.
Following the race, Sebastian Vettel was facing a 10-place penalty for the next race in Shanghai, China, for causing the collision with Mark Webber which put both drivers out of the race, but this punishment was reduced to a reprimand. When new evidence was presented to the FIA, it began an investigation of Lewis Hamilton for dangerous driving and causing the collision himself. Hamilton was leading the race right in front of Webber, before suddenly braking and forcing Webber to follow suit lest he be penalised for overtaking behind the safety car; the collision occurred when Vettel's car ran into the back of Webber. Hamilton might have faced either disqualification or a grid penalty for the next race, but the FIA decided not to impose any penalty.
Before the race, there were suggestions that the plan of carrying all of the 100,000 spectators or more only by shuttle bus would be impossible. To relieve people's doubts, the circuit was said that there was complete preparation for the race. These doubts were realised when, after the qualifying session on Saturday, the shuttle buses could not leave because the road on the east gate of the circuit sank around 16:00. As a result, approximately 20,000 spectators were forced to stay for four hours or more until 21:00. As for the race on Sunday only the shuttle bus was admitted for spectators as transport.
…Although I have worked in Formula One for thirty years, this is the first time I have seen a Grand Prix race without seeing fans wave the flag of Ferrari. I think this is inexcusable. What I heard was Fuji Speedway prohibited flags and banners of F1 teams, but I saw a Toyota F1 flag in the stands of the Toyota-owned circuit.
The track later said the flags were not prohibited, but there was a miscommunication between the race organisers and the staff of the circuit. However, many fans familiar with Formula One noticed the strangeness of the circuit without the team banners. Why was this not solved on initial notice? (kaizen) …
On the other hand, there was a high evaluation by the visitors of the paddock. Though there were a lot of problems and the Grand Prix was criticized very much during the event, the Team Principal of Toyota F1, Tadashi Yamashina praised the event:
…I would like to say congratulations to Fuji Speedway for hosting this race for the first time in 30 years. The facilities here are excellent and the race was well organised.
| Pos | Name | Team/Engine | Part 1 | Part 2 | Part 3 |
|---|---|---|---|---|---|
| 1 | Lewis Hamilton | McLaren-Mercedes | 1:25.489 | 1:24.753 | 1:25.368 |
| 2 | Fernando Alonso | McLaren-Mercedes | 1:25.379 | 1:24.806 | 1:25.438 |
| 3 | Kimi Räikkönen | Ferrari | 1:25.390 | 1:24.988 | 1:25.516 |
| 4 | Felipe Massa | Ferrari | 1:25.359 | 1:25.049 | 1:25.765 |
| 5 | Nick Heidfeld | BMW Sauber | 1:25.971 | 1:25.248 | 1:26.505 |
| 6 | Jenson Button | Honda | 1:26.614 | 1:25.454 | 1:26.913 |
| 7 | Mark Webber | Red Bull-Renault | 1:25.970 | 1:25.535 | 1:26.914 |
| 8 | Sebastian Vettel | Toro Rosso-Ferrari | 1:26.025 | 1:25.909 | 1:26.973 |
| 9 | Robert Kubica | BMW Sauber | 1:26.300 | 1:25.530 | 1:27.225 |
| 10 | Giancarlo Fisichella | Renault | 1:26.909 | 1:26.033 | |
| 11 | Heikki Kovalainen | Renault | 1:27.223 | 1:26.232 | |
| 12 | David Coulthard | Red Bull-Renault | 1:26.904 | 1:26.247 | |
| 13 | Jarno Trulli | Toyota | 1:26.711 | 1:26.253 | |
| 14 | Vitantonio Liuzzi | Toro Rosso-Ferrari | 1:27.234 | 1:26.948 | |
| 15 | Ralf Schumacher | Toyota | 1:27.191 | no time† | |
| 16 | Nico Rosberg‡ | Williams-Toyota | 1:26.579 | 1:25.816 | 1:26.728 |
| 17 | Rubens Barrichello | Honda | 1:27.323 | ||
| 18 | Alexander Wurz | Williams-Toyota | 1:27.454 | ||
| 19 | Anthony Davidson | Super Aguri-Honda | 1:27.564 | ||
| 20 | Adrian Sutil | Spyker-Ferrari | 1:28.628 | ||
| 21 | Takuma Sato | Super Aguri-Honda | 1:28.762 | ||
| 22 | Sakon Yamamoto | Spyker-Ferrari | 1:29.668 |
| Pos | No | Driver | Constructor | Laps | Time/Retired | Grid | Points |
|---|---|---|---|---|---|---|---|
| 1 | 2 | Lewis Hamilton | McLaren-Mercedes | 67 | 2:00:34.579 | 1 | 10 |
| 2 | 4 | Heikki Kovalainen | Renault | 67 | +8.377 secs | 11 | 8 |
| 3 | 6 | Kimi Räikkönen | Ferrari | 67 | +9.478 secs | 3 | 6 |
| 4 | 14 | David Coulthard | Red Bull-Renault | 67 | +20.297 secs | 12 | 5 |
| 5 | 3 | Giancarlo Fisichella | Renault | 67 | +38.864 secs | 10 | 4 |
| 6 | 5 | Felipe Massa | Ferrari | 67 | +49.042 secs | 4 | 3 |
| 7 | 10 | Robert Kubica | BMW Sauber | 67 | +49.285 secs | 9 | 2 |
| 8 | 20 | Adrian Sutil | Spyker-Ferrari | 67 | +1:00.129 secs | 20 | 1 |
| 9 | 18 | Vitantonio Liuzzi | Toro Rosso-Ferrari | 67 | +1:20.622 secs | 14 | |
| 10 | 8 | Rubens Barrichello | Honda | 67 | +1:28.342 secs | 17 | |
| 11 | 7 | Jenson Button | Honda | 66 | Suspension | 6 | |
| 12 | 21 | Sakon Yamamoto | Spyker-Ferrari | 66 | +1 lap | 22 | |
| 13 | 12 | Jarno Trulli | Toyota | 66 | +1 lap | 13 | |
| 14 | 9 | Nick Heidfeld | BMW Sauber | 65 | Technical | 5 | |
| 15 | 22 | Takuma Sato | Super Aguri-Honda | 65 | Collision | 21 | |
| Ret | 11 | Ralf Schumacher | Toyota | 55 | Puncture | 15 | |
| Ret | 23 | Anthony Davidson | Super Aguri-Honda | 54 | Throttle | 19 | |
| Ret | 16 | Nico Rosberg | Williams-Toyota | 49 | Electronics | 16 | |
| Ret | 19 | Sebastian Vettel | Toro Rosso-Ferrari | 46 | Collision | 8 | |
| Ret | 15 | Mark Webber | Red Bull-Renault | 45 | Collision | 7 | |
| Ret | 1 | Fernando Alonso | McLaren-Mercedes | 41 | Accident | 2 | |
| Ret | 17 | Alexander Wurz | Williams-Toyota | 19 | Collision | 18 |