The feeding apparatus is called the stomotheca. It is formed by extensions from the pedipalps and the first leg pair.
The ocularium, an elevated mound placed in the middle of the carapace, usually contains two simple eyes, although they are lacking in some species. It can be smooth or armed with small or large spines. In some Dyspnoi the eyes are located on projections that form a hood covering the mouthparts.
On the sides of the prosoma there are defensive glands called ozopores, which in Cyphophthalmi open on the tip of an elevated cone, the ozophore.
The prosomal muscles attach to the endosternite, a horizontal sheet of connective tissue similar to cartilage that acts as an internal skeleton. In some harvestmen (Phalangium, Odiellus, and Leiobunum) it contains calcium deposits. The endosternite is U-shaped, with the arms facing forward and embracing the ganglion above the esophagus.
While the metatarsus is undivided, the tarsus can consist of three to over one hundred tarsomeres. In most Cyphophthalmi the tarsus is entirely undivided. Many long-legged forms in the superfamily Phalangioidea can wrap their tarsi two or three times around twigs. Nevertheless the tarsi contain no muscles, but only tendons of the claw muscles. These muscles originate in the patella, tibia and metatarsus. Most harvestman legs have only one claw, but in Grassatores, the later two pairs of legs end in two claws, where an additional structure can even give the appearance of three claws.
Nymphal stages of Grassatores and some Insidiatores feature additional structures on the latter two pairs of tarsi, which probably allow adhesion to smooth surfaces during molting, as they are not present in adults.
Legs of Eupnoi and many long-legged Dyspnoi are weak at the base of the femora. When legs are trapped or caught by a predator, these harvestman can detach the restrained leg by a powerful movement of the coxa-trochanter joint. The detached legs of Phalangioidea can twitch for several minutes, with oxygen provided by spiracles in the tibia. The pacemaker neurons responsible for this become active when they lose the connection to the central nervous system. Each of the two twitching leg joints contains an independent pacemaker. Even immature harvestmen cannot regenerate lost legs.
One reason for the hanging stance characteristic for long-legged harvestmen seems to be enhanced stability on exposed surfaces, for example against wind. Leiobunum vittatum (and probably other harvestmen) walks by lifting the "central" (counting the second pair as antennae) leg of one side and the outer legs of the other side forward while the other three rest on the ground (alternating tripod gait, similar to that of insects).
While the genital opening, the gonopore, derives from the second opisthosomal somite in all arachnids, it is displaced between the fourth pair of legs in harvestmen, thus appearing to be part of the prosoma. The ovipositor or penis is withdrawn into the first opisthosomal somite. The openings of the respiratory system, the spiracles or stigmata, are located on the sides of the second somite.
The muscles of the opisthosoma mostly seem to regulate the volume and internal pressure of the body fluid.
The foregut (stomodeum) develops from the ectoderm. It is called pharynx before passing through the central nervous system, and esophagus inside the CNS. Shortly afterwards it empties into the midgut.
The midgut (mesenteron) is the largest organ in harvestmen and fills most of the opisthosoma. Like in other arthropods it is derived from the endoderm. Unlike the fore- and hindgut, which are derived from ectoderm, it has no cuticular lining. The midgut is surrounded by muscle cells, trachaeae and intermediate tissue, which does not form a fat body like in scorpions and solifuges. The epithelial cells of the midgut are often infected by rickettsia-like parasites, like in some other arachnids. Resorptive cells, which may be unique to harvestmen, contain lipid droplets, glycogen and mineral spherites. These spherites are also common in many arachnids. They seem to function in heavy metal excretion and mineral storage. Overwintering juveniles store calcium and phosphates in it needed for molting. Silicon is present throughout the life, but decreases with age, as does the number of spherites.
The hindgut is a short invagination of the ectoderm, linking the midgut to the anus. It can be dilated and shortened by muscles.
Five types of blood cells have been found, none of which are unique to harvestmen. Prohemocytes are about five µm in diameter and rather scarce. They probably act as stem cells to the amoeboid plasmatocytes, which are about 11 µm and are known to ingest bacteria and dead cells. Granulocytes apparently develop from plasmatocytes and are also amoeboid, although no phagocytosis has been observed. They may act as storage cells. Spherulocytes are up to 15 µm long seem to be non-motile. They contain many spherules, whose composition changes over time, but the function is not known. Coagulocytes, which probably derived from granulocytes, release granules and disintegrate when they come in contact with uncleaned surfaces in vitro, probably due to present bacterial endotoxins. Despite their name, these cells seem not to play a role in hemolymph coagulation.
Phalangioidea have additional spiracles on the tibiae of the pedipalps and legs, thus helping in gas exchange in the long legs. They also provide a severed leg with oxygen, allowing it to continue twitching for some time: A leg of Opilio twitched for about 23 minutes, but stopped after about 40 seconds when the spiracles were sealed.
The penis is often complex, consisting of a long shaft and a shorter glans at the end, which is often equipped with various projections such as spines. In many species muscles move the glans relative to the shaft, but in Grassatores these muscles are lacking, and the movement is achieved purely by hydraulic means. A muscular propulsive organ, which pushes the ejaculate out, is missing in Cyphophthalmi, which have very short penises.
The ovipositor is originally segmented and long, but has been reduced in several groups.