PGP and other similar products follow the OpenPGP standard (RFC 4880) for encrypting and decrypting data.
The message recipient uses the sender's public key and the digital signature to recover the original message digest. He compares this message digest with the message digest he computed her/himself from the (recovered) plaintext. If the signature matches the received plaintext's message digest, it must be presumed (to a very high degree of confidence) that the message received has not been corrupted, either deliberately or accidentally. As well, since it was properly signed, it is very likely (to a very high degree of confidence) that the claimed sender actually did send it.
The web of trust protocol was first described by Zimmermann in 1992 in the manual for PGP version 2.0:
The web of trust mechanism has advantages over a centrally managed Public key infrastructure scheme such as that used by S/MIME, but has not been universally used. Users have been willing to accept certificates and check their validity manually, or to simply accept them. The underlying problem has found no satisfactory solution.
PGP versions have always included a way to cancel ('revoke') identity certificates. A lost or compromised private key will require this if communication security is to be retained by that user. This is, more or less, equivalent to the certificate revocation lists of centralized PKI schemes. Recent PGP versions have also supported certificate expiration dates.
The problem of correctly identifying a public key as belonging to a particular user is not unique to PGP. All public key / private key cryptosystems have the same problem, if in slightly different guise, and no fully satisfactory solution is known. PGP's original scheme, at least, leaves the decision whether or not to use its endorsement/vetting system to the user, while most other PKI schemes do not, requiring instead that every certificate attested to by a central certificate authority be accepted as correct.
The cryptographic security of PGP encryption depends on the assumption that the algorithms used are unbreakable by direct cryptanalysis with current equipment and techniques. For instance, in the original version, the RSA algorithm was used to encrypt session keys; RSA's security depends upon the one-way function nature of mathematical integer factoring. Likewise, the secret key algorithm used in PGP version 2 was IDEA, which might, at some future time, be found to have a previously unsuspected cryptanalytic flaw. Specific instances of current PGP, or IDEA, insecurities — if they exist — are not publicly known. As current versions of PGP have added additional encryption algorithms, the degree of their cryptographic vulnerability varies with the algorithm used. In practice, each of the algorithms in current use is not publicly known to have cryptanalytic weaknesses.
Any agency wanting to read PGP messages would probably use easier means than standard cryptanalysis, e.g. rubber-hose cryptanalysis or black-bag cryptanalysis i.e. installing some form of trojan horse or keystroke logging software/hardware on the target computer to capture encrypted keyrings and their passwords. The FBI has already used this attack against PGP in its investigations. However, it is important to note that any such vulnerabilities apply not just to PGP, but to all encryption software.
In 2003, an incident involving seized Psion PDAs belonging to members of the Red Brigade indicated that neither the Italian police nor the FBI were able to decode PGP-encrypted files stored on them. 
A more recent incident in December 2006 (see United States v. Boucher) involving US customs agents and a seized laptop PC which allegedly contained child pornography indicates that US Government agencies find it "nearly impossible" to access PGP-encrypted files. Additionally, a judge ruling on the same case in November 2007 has stated that forcing the suspect to reveal his PGP pass-phrase would violate his Fifth Amendment rights i.e. a suspect's constitutional right not to incriminate himself.
Zimmermann challenged these regulations in a curious way. He published the entire source code of PGP in a hardback book, via MIT Press, which was distributed and sold widely. Anybody wishing to build their own copy of PGP could buy the $60 book, cut off the covers, separate the pages, and scan them using an OCR program, creating a set of source code text files. One could then build the application using the freely available GNU C Compiler. PGP would thus be available anywhere in the world. The claimed principle was simple: export of munitions—guns, bombs, planes, and software—was (and remains) restricted; but the export of books is protected by the First Amendment. The question was never tested in court in respect to PGP, but had been established by the Supreme Court in the Bernstein case.
US export regulations regarding cryptography remain in force, but were liberalized substantially throughout the late 1990s. Since 2000, compliance with the regulations is also much easier. PGP encryption no longer meets the definition of a non-exportable weapon, and can be exported internationally except to 7 specific countries and a named list of groups and individuals.
After the Federal criminal investigation ended in 1996, Zimmermann and his team started a company to produce new versions of PGP encryption. They merged with Viacrypt (to whom Zimmermann had sold commercial rights and who had licensed RSA directly from RSADSI) which then changed its name to PGP Incorporated. The newly combined Viacrypt/PGP team started work on new versions of PGP encryption based on the PGP 3 system. Unlike PGP 2, which was an exclusively command line program, PGP 3 was designed from the start as a software library allowing users to work from a command line or inside a GUI environment. The original agreement between Viacrypt and the Zimmermann team had been that Viacrypt would have even-numbered versions and Zimmermann odd-numbered versions. Viacrypt, thus, created a new version (based on PGP 2) that they called PGP 4. To remove confusion about how it could be that PGP 3 was the successor to PGP 4, PGP 3 was renamed and released as PGP 5 in May 1997.
OpenPGP is on the Internet Standards Track; the current specification is RFC 4880 (November 2007). OpenPGP is still under active development and the successor to RFC 2440, which is RFC 4880, has been made a proposed standard. Many e-mail clients provide OpenPGP-compliant email security as described in RFC 3156.
The Free Software Foundation has developed its own OpenPGP-compliant program called GNU Privacy Guard (abbreviated GnuPG or GPG). GnuPG is freely available together with all source code under the GNU General Public License (GPL) and is maintained separately from several Graphical User Interfaces (GUIs) that interact with the GnuPG library for encryption, decryption and signing functions (see KGPG, Seahorse, MacGPG). Several other vendors have also developed OpenPGP-compliant software.
In early 2001, Zimmermann left NAI. He served as Chief Cryptographer for Hush Communications, who provide an OpenPGP-based e-mail service, Hushmail. He has also worked with Veridis and other companies. In October, 2001, NAI announced that its PGP assets were for sale and that it was suspending further development of PGP encryption. The only remaining asset kept was the PGP E-Business Server (the original PGP Commandline version). In February 2002, NAI cancelled all support for PGP products, with the exception of the re-named commandline product. NAI (now McAfee) continues to sell and support the product under the name McAfee E-Business Server.
While originally used primarily for encrypting the contents of e-mail messages and attachments from a desktop client, PGP products have been diversified since 2002 into a set of encryption applications which can be managed by an optional central policy server. PGP encryption applications include e-mail and attachments, digital signatures, laptop full disk encryption, file and folder security, protection for IM sessions, batch file transfer encryption, and protection for files and folders stored on network servers and, more recently, encrypted and/or signed HTTP request/responses by means of a client side (Enigform) and a server side (mod auth openpgp) plugin.
The PGP Desktop 9.x family includes PGP Desktop Email, PGP Whole Disk Encryption, and PGP NetShare. Additionally, a number of Desktop bundles are also available. Depending on application, the products feature desktop e-mail, digital signatures, IM security, whole disk encryption, file and folder security, self decrypting archives, and secure shredding of deleted files. Capabilities are licensed in different ways depending on features required.
The PGP Universal Server 2.x management console handles centralized deployment, security policy, policy enforcement, key management, and reporting. It is used for automated e-mail encryption in the gateway and manages PGP Desktop 9.x clients. In addition to its local keyserver, PGP Universal Server works with the PGP public keyserver—called the PGP Global Directory—to find recipient keys. It has the capability of delivering e-mail securely when no recipient key is found via a secure HTTPS browser session.
With PGP Desktop 9.x managed by PGP Universal Server 2.x, first released in 2005, all PGP encryption applications are based on a new proxy-based architecture. These newer versions of PGP software eliminate the use of e-mail plug-ins and insulate the user from changes to other desktop applications. All desktop and server operations are now based on security policies and operate in an automated fashion. The PGP Universal server automates the creation, management, and expiration of keys, sharing these keys among all PGP encryption applications.
The current shipping versions are PGP Desktop 9.8.3 and PGP Universal 2.8.3.
Also available are PGP Command Line, which enables command line-based encryption and signing of information for storage, transfer, and backup, as well as the PGP Support Package for BlackBerry which enables RIM BlackBerry devices to enjoy sender-to-recipient messaging encryption.
New versions of PGP applications use both OpenPGP and the S/MIME, allowing communications with any user of a NIST specified standard.
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