On special occasions, typically around holidays, the Tokyo Metro Hibiya Line and Namboku Line operate special , formerly known as , direct through services to the Minatomirai Line. From 2012, the Tokyo Metro Fukutoshin Line will also inter-run to/from the Minatomirai Line.
|Station Name|| Local|
| Commuter Express|
| Limited Express|
|Continues to/from Tōkyū Tōyoko Line, through service to Shibuya Station|
|Yokohama Station||Tōkyū Tōyoko Line (through service to Shibuya Station)|
Tōkaidō Main Line, Yokosuka Line, Keihin-Tōhoku Line, Negishi Line, Keikyū Main Line, Sagami Railway Main Line, Yokohama City Subway Line 3
|Minato Mirai Station|