This system for writing chemical formulas was invented by the 19th-century Swedish chemist Jöns Jakob Berzelius.
A chemical formula supplies information about the types and spatial arrangement of bonds in the chemical, though it does not necessarily specify the exact isomer. For example ethane consists of two carbon atoms single-bonded to each other, with each carbon atom having three hydrogen atoms bonded to it. Its chemical formula can be rendered as CH3CH3. In ethylene there is a double bond between the carbon atoms (and thus each carbon only has two hydrogens), therefore the chemical formula may be written: CH2CH2, and the fact that there is a double bond between the carbons is implicit because carbon has a valence of four. However, a more explicit and correct method is to write H2C=CH2 or less commonly H2C::CH2. The two lines (or two pairs of dots) indicate that a double bond connects the atoms on either side of them.
A triple bond may be expressed with three lines or pairs of dots, and if there may be ambiguity, a single line or pair of dots may be used to indicate a single bond.
Molecules with multiple functional groups that are the same may be expressed in the following way: (CH3)3CH. However, this implies a different structure from other molecules that can be formed using the same atoms (isomers). The formula (CH3)3CH implies a chain of three carbon atoms, with the middle carbon atom bonded to another carbon (see image of 4 carbon "C" atoms), and the remaining bonds on the carbons all leading to hydrogen atoms (hydrogen atoms are not shown in image). However, the same number of atoms (10 hydrogens and 4 carbons, or C4H10) may be used to make a straight chain: CH3CH2CH2CH3.
The alkene but-2-ene has two isomers which the chemical formula CH3CH=CHCH3 does not identify. The relative position of the two methyl groups must be indicated by additional notation denoting whether the methyl groups are on the same side of the double bond (cis or Z) or on the opposite sides from each other (trans or E).
For polymers, parentheses are placed around the repeating unit. For example, a hydrocarbon molecule that is described as: CH3(CH2)50CH3, is a molecule with fifty repeating units. If the number of repeating units is unknown or variable, the letter n may be used to indicate this: CH3(CH2)nCH3.
For ions, the charge on a particular atom may be denoted with a right-hand superscript. For example Na+, or Cu2+. The total charge on a charged molecule or a polyatomic ion may also be shown in this way. For example: hydronium, H3O+ or sulfate, SO42-.
For more complex ions, brackets  are often used to enclose the ionic formula, as in [B12H12]2-. Parentheses () can be nested inside brackets to indicate a repeating unit, as in [Co(NH3)6]3+. Here (NH3)6 indicates that the ion contains six NH3 groups, and  encloses the entire formula of the ion with charge +3.
Although isotopes are more relevant to nuclear chemistry or stable isotope chemistry than to conventional chemistry, different isotopes may be indicated with a left-hand superscript in a chemical formula. For example, the phosphate ion containing radioactive phosphorus-32 is 32PO43-. Also a study involving stable isotope ratios might include the molecule 18O16O.
A left-hand subscript is sometimes used to indicate redundantly the atomic number. For example, 8O2 for dioxygen, and 168O2 for the most abundant isotopic species of dioxygen. This is convenient when writing equations for nuclear reactions, in order to show the balance of charge more clearly.
In chemistry, the empirical formula of a chemical is a simple expression of the relative number of each type of atom or ratio of the elements in the compound. Empirical formulas are the standard for ionic compounds, such as CaCl2, and for macromolecules, such as SiO2. An empirical formula makes no reference to isomerism, structure, or absolute number of atoms. The term empirical refers to the process of elemental analysis, a technique of analytical chemistry used to determine the relative percent composition of a pure chemical substance by element.
For example hexane has a molecular formula of C6H14, or structurally CH3CH2CH2CH2CH2CH3, implying that it has a chain structure of 6 carbon atoms, and 14 hydrogen atoms. However, the empirical formula for hexane is C3H7. Likewise the empirical formula for hydrogen peroxide, H2O2, is simply HO expressing the 1:1 ratio of component elements.
The @ symbol ("at") indicates an atom or molecule trapped inside a cage but not chemically bound to it. This notation became popular in the 1990s with the discovery of fullerene cages, which can trap atoms such as La to form La@C60 or La@C82 for example. A non-fullerene example is [As@Ni12As20]3-, an ion in which one As atom is trapped in a cage formed by the other 32 atoms.
Main article: Non-stoichiometric compound
Chemical formulas most often use integers for each element. However, there is a whole class of compounds, called non-stoichiometric compounds, that cannot be represented by small integers. Such a formula might be written using decimal fractions, as in Fe0.95O, or it might include a variable part represented by a letter, as in Fe1–xO, where x is normally much less than 1.