Meanwhile, A.J. and another friend confess to stealing answers to a geometry test after their principal convinces them he has uncovered DNA evidence at the scene, and A.J. is promptly expelled from Verbum Dei. Tony becomes extremely angered when he hears the news and decides to save A.J. before it is too late. His solution is to send his son to military school. Over dinner, Tony and Carmela mull over school brochures as A.J. nervously awaits his fate. Carmela then receives a phone call from Marie, Rosalie Aprile's sister, informing her that Jackie has been shot and killed by "drug dealers". Carmela hurries over to Rosalie's to comfort her grieving friend.
Paulie Walnuts demands that Tony have a sitdown with himself and Ralphie. When the request is finally honored, Paulie states that because he gave Ralph valuable information to a job that Ralphie's crew subsequently pulled off (as well as the act being on Paulie's turf), he is owed half of the take ($50,000). Tony listens to the case and orders that Ralphie turn over $12,000, much to Paulie's shock and dismay. When Paulie tries to convince Tony to reconsider, Silvio Dante intrudes, stating that Tony has made the decision and the sitdown is over.
Uncle Junior's cancer is in remission, leaving him physically competent for a RICO trial. However, the FBI is still intent on bringing down Tony. With Big Pussy Bonpensiero now "MIA" (actually deceased), Agent Dwight Harris recommends that they look for information via Christopher Moltisanti, who is moving through the ranks ever closer to Tony. Bureau Chief Frank Cubitoso enlists Agent Deborah Ciccerone on an undercover mission to befriend Chris's fiancée, Adriana La Cerva, and report back on whatever information she can find.
A.J. is taken to an appointment with the military school's administrator, Major Zwingli, who lays out the basic schedule for students that attend the school. A.J. is bemused and unnerved as the major tells him what to expect as a new recruit. Zwingli then has a talk with Tony and Carmela about the rigorous program and how he believes it will benefit their child. Carmela is still concerned since she believes they are training him to be a "professional killer". Tony tries to convince Carmela that their son would be learning discipline and respect, not violence. The disagreement degenerates into a major row with door slamming and yelling and ending with the two sleeping in separate rooms for the night.
At Jackie's wake, Rosalie and daughter Kelli Aprile are extremely emotional. When Meadow sees Jackie lying in his casket, she begins to cry uncontrollably. Tony and Carmela try to comfort her, but are embarrassed when Rosalie notes the lack of attendance: the funeral has coincided with Super Bowl Sunday. When everyone settles down, Carmela views Jackie lying in his casket. That night, Tony and Carm are reconciled and Carmela decides to support Tony's decision to send A.J. to military school.
As A.J. prepares to depart for the military school, he puts on his dress uniform for his proud parents. Tony urges him to put on his military hat that came with the uniform, much to A.J.'s chagrin. Tony, agitated at the insubordinant attitude, gets off of the sofa and approaches his son menacingly. A.J. complies and puts on the hat, a traditional military Shako. A.J then looks at himself in the mirror. He turns back and, feeling humiliated and in tears, asks not to be sent away. Tony, disdainful, tells him to stop and reaffirms his decision, saying that "he needs toughening up". To Tony and Carmela's horror, A.J. promptly suffers a panic attack and collapses. In therapy, Tony relates events to Dr. Melfi, and dismayed that A.J. has inherited his psychiatric affliction. He says that he can no longer send his son to military school and begins to lose hope that he can ever rescue his child from disaster.
On the day of Jackie's burial, Christopher and Silvio are arrested at the cemetery for illegal gambling and are escorted to the District Attorney's office, while Paulie flees through the headstones. Uncle Junior witnesses this and runs back to his car, almost leaving Bobby Baccalieri behind. After the burial, a small group of people return to Rosalie's to comfort her, before proceeding to Vesuvio. At the restaurant parking lot, Paulie meets Johnny Sack, and expresses his contempt for Tony's ruling in Ralphie's favor, telling Johnny to offer his services to the New York family boss, Carmine Lupertazzi. Silvio and Chris are able to make bail quick enough to meet everyone after the funeral at Vesuvio. Back inside, Junior begins to sing the Italian love song "Core 'ngrato" ("Ungrateful Heart"). Everyone is touched, except for a very drunk Meadow who throws pieces of bread at Junior as he sings. Confronted by her father outside, Meadow tearfully denounces the funeral proceedings as "bullshit" and runs across the street, almost being hit in traffic as Tony looks on in shock. Tony returns to the dinner, quietly telling Carmela that Meadow hopefully has money to catch a ride back to Columbia University. He then puts his arm around A.J. as the three listen to Uncle Junior continue to croon.