AGF has twice reached the quarter-final stage in European Cups: In 1961, losing to SL Benfica in the European Champion Clubs' Cup (1-4 home and 1-3 away), and in 1989, losing to FC Barcelona in the UEFA Cup Winners' Cup (0-1 home, 0-0 away). AGF has played a total of 52 matches in European Cups: 18 matches in the former European Champion Clubs' Cup, 18 in the Cup-Winners’ Cup (a Danish club record), 14 in the UEFA Cup and two preliminary round matches for the UEFA Cup.
The players in bold have senior international caps. (captain)
| Season | Pos. | Pl. | W | D | L | GS | GA | P | Cup | Notes | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1996-1997 | 1D | 3 | 33 | 14 | 10 | 9 | 75 | 51 | 52 | last 16 | |
| 1997-1998 | 1D | 8 | 33 | 11 | 10 | 12 | 53 | 52 | 43 | ||
| 1998-1999 | 1D | 10 | 33 | 11 | 10 | 12 | 45 | 55 | 43 | ||
| 1999-2000 | 1D | 10 | 33 | 9 | 9 | 15 | 36 | 55 | 36 | ||
| 2000-2001 | 1D | 8 | 33 | 13 | 5 | 15 | 54 | 58 | 44 | ||
| 2001-2002 | 1D | 10 | 33 | 7 | 10 | 16 | 42 | 56 | 31 | last 16 | |
| 2002-2003 | 1D | 10 | 33 | 10 | 10 | 13 | 49 | 59 | 40 | ||
| 2003-2004 | 1D | 8 | 33 | 11 | 3 | 19 | 45 | 67 | 36 | ||
| 2004-2005 | 1D | 9 | 33 | 11 | 6 | 16 | 47 | 53 | 39 | quarter-final | |
| 2005-2006 | 1D | 12 | 33 | 4 | 10 | 19 | 36 | 63 | 22 | 4th round | relegated |
| 2006-2007 | 2D | 2 | 30 | 18 | 5 | 7 | 58 | 38 | 59 | promoted | |
| 2007-2008 | 1D | 10 | 33 | 7 | 8 | 18 | 33 | 51 | 29 |